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Textpresso Sites
Our Production Sites:
C. elegans
D. melanogaster
Curation-specific Sites:
HIV (1)
HIV (2)
WNT Pathway (1)
WNT Pathway (2)
Our Pilot Sites:
Sites by other groups:
S. cerevisiae
Textpresso for Site-Specific Recombinases
Regulon DB
Ecocyc Textpresso
O. sativa
wheat, barley
Textpresso for sea urchin
Textpresso for Echinoderm

Textpresso was originally described in:

Textpresso: an ontology-based information retrieval and extraction system for biological literature
Muller HM, Kenny EE, Sternberg PW
PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.
Please use this as a reference if you are citing Textpresso.

Click here for papers citing Textpresso that are available on PubMedCentral


Papers from or with significant contributions from the Textpresso group

BC4GO: a full-text corpus for the BioCreative IV GO task.
Van Auken K, Schaeffer ML, McQuilton P, Laulederkind SJ, Li D, Wang SJ, Hayman GT, Tweedie S, Arighi CN, Done J, Müller HM, Sternberg PW, Mao Y, Wei CH, Lu Z.
Database (Oxford). 2014 Jul 28;2014:bau074.

An overview of the BioCreative 2012 workshop track III: interactive text mining task.
Arighi CN, Carterette B, K.B. Cohen KB, Krallinger M, Wilbur MJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jiminez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatraryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken KM, Li Y, Chan J, Müller HM, Cui HM, Balhoff JP, Wu CY, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, and Wu C.
Database (Oxford). 2013 Jan 17;2013:bas056.

Textmining in the biocuration workflow: application for literature curation at WormBase, dictyBase, and TAIR.
Van Auken KM, Fey P, Berardini TZ, Dodson R, Cooper L, Li D, Chan J, Li Y, Basu S, Müller HM, Chisolm R, Huala E, Sternberg PW, and the WormBase Consortium.
Database (Oxford). 2012 Nov 17;2012:bas040.

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.
Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME.
Database (Oxford). 2012 Mar 20;2012:bas005.

Toward an interactive article: integrating journals and biological databases.
Rangarajan A, Schedl T, Yook K, Chan J, Haenel S, Otis L, Faelten S, DePellegrin-Connelly T, Isaacson R, Skrzypek MS, Marygold SJ, Stefancsik R, Cherry JM, Sternberg PW, Müller HM.
BMC Bioinformatics. 2011 May 19;12:175.

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.
Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.
BMC Bioinformatics. 2009 Jul 21;10:228.

Textpresso for Neuroscience: Searching the Full Text of Thousands of Neuroscience Research Papers
Müller HM, Rangarajan A, Teal TK, Sternberg PW.
Neuroinformatics. 2008 Sep;6(3):195-204. Epub 2008 Oct 24.

Automatic document classification of biological literature
Chen D, Müller HM, Sternberg PW.
BMC Bioinformatics. 2006 Aug 7;7:370.


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