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Textpresso Sites
Our Production Sites:
C. elegans
Nematode
Mouse
D. melanogaster
Neuroscience
Arabidopsis
Dicty
Curation-specific Sites:
HIV (1)
HIV (2)
WNT Pathway (1)
WNT Pathway (2)
FEED
Our Pilot Sites:
Mycoplasma
Rat
Zebrafish
Alzheimer's
Sites by other groups:
Xenopus
S. cerevisiae
Candida
Regulon DB
Ecoliwiki Textpresso
Ecocyc Textpresso
O. sativa
wheat, barley
Textpresso for sea urchin
Textpresso for Echinoderm
  Publications

Textpresso was originally described in:

Textpresso: an ontology-based information retrieval and extraction system for biological literature
Muller HM, Kenny EE, Sternberg PW
PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.
Please use this as a reference if you are citing Textpresso.

Click here for papers citing Textpresso that are available on PubMedCentral

 

Papers from or with significant contributions from the Textpresso group

Textmining in the biocuration workflow: application for literature curation at WormBase, dictyBase, and TAIR.
Van Auken KM, Fey P, Berardini TZ, Dodson R, Cooper L, Li D, Chan J, Li Y, Basu S, Müller HM, Chisolm R, Huala E, Sternberg PW, and the WormBase Consortium.
Accepted for publication in Database (Oxford).

An overview of the BioCreative 2012 workshop track III: interactive text mining task.
Arighi CN, Carterette B, K.B. Cohen KB, Krallinger M, Wilbur MJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jiminez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatraryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken KM, Li Y, Chan J, Müller HM, Cui HM, Balhoff JP, Wu CY, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, and Wu C.
Accepted for publication in Database.

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.
Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME.
Database (Oxford). 2012 Mar 20;2012:bas005.

Toward an interactive article: integrating journals and biological databases.
Rangarajan A, Schedl T, Yook K, Chan J, Haenel S, Otis L, Faelten S, DePellegrin-Connelly T, Isaacson R, Skrzypek MS, Marygold SJ, Stefancsik R, Cherry JM, Sternberg PW, Müller HM.
BMC Bioinformatics. 2011 May 19;12:175.

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.
Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.
BMC Bioinformatics. 2009 Jul 21;10:228.

Textpresso for Neuroscience: Searching the Full Text of Thousands of Neuroscience Research Papers
Müller HM, Rangarajan A, Teal TK, Sternberg PW.
Neuroinformatics. 2008 Sep;6(3):195-204. Epub 2008 Oct 24.

Automatic document classification of biological literature
Chen D, Müller HM, Sternberg PW.
BMC Bioinformatics. 2006 Aug 7;7:370.

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